Reinventing the wheel
One of the main problem in the architecture is the over-engineering that not only complicates a process, turns less efficient and less functional.
Speaking as someone who spent quite a bit of time working with JPA (Java Persistence API, basically the standardized ORM API for Java/J2EE/EJB), which includes Hibernate, EclipseLink, Toplink, OpenJPA and others, I'll share some of my observations.
ORMs are not fast. They can be adequate and most of the time adequate is OK but in a high-volume low-latency environment they're a no-no; In general purpose programming languages like Java and C# you need an awful lot of magic to make them work (eg load-time weaving in Java, instrumentation, etc); When using an ORM, rather than getting further from SQL (which seems to be the intent), you'll be amazed how much time you spend tweaking XML and/or annotations/attributes to get your ORM to generate performant SQL; For complex queries, there really is no substitute. Like in JPA there are some queries that simply aren't possible that are in raw SQL and when you have to use raw SQL in JPA it's not pretty (C#/.Net at least has dynamic types--var--which is a lot nicer than an Object array); There are an awful lot of "gotchas" when using ORMs. This includes unintended or unexpected behavior, the fact that you have to build in the capability to do SQL updates to your database (by using refresh() in JPA or similar methods because JPA by default caches everything so it won't catch a direct database update--running direct SQL updates is a common production support activity); The object-relational mismatch is always going to cause problems. With any such problem there is a tradeoff between complexity and completeness of the abstraction. At times I felt JPA went too far and hit a real law of diminishing returns where the complexity hit wasn't justified by the abstraction.
There's another problem which takes a bit more explanation.
The traditional model for a Web application is to have a persistence layer and a presentation layer (possibly with a services or other layers in between but these are the important two for this discussion). ORMs force a rigid view from your persistence layer up to the presentation layer (ie your entities).
One of the criticisms of more raw SQL methods is that you end up with all these VOs (value objects) or DTOs (data transfer objects) that are used by simply one query. This is touted as an advantage of ORMs because you get rid of that.
Thing is those problems don't go away with ORMs, they simply move up to the presentation layer. Instead of creating VOs/DTOs for queries, you create custom presentation objects, typically one for every view. How is this better? IMHO it isn't.